PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g052610.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 244aa MW: 28526.1 Da PI: 7.5919 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.5 | 3.1e-13 | 123 | 167 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + +t+ q+ s+ qky Sopim05g052610.0.1 123 PWTEEEHRRFLMGLEKYGKGDWRNISRNFVISKTPTQVASHAQKY 167 8*****************************789***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.245 | 21 | 75 | IPR017884 | SANT domain |
SMART | SM00717 | 1.0E-8 | 22 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.44E-11 | 24 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-5 | 25 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-6 | 25 | 72 | No hit | No description |
PROSITE profile | PS51294 | 20.218 | 116 | 172 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-16 | 118 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-18 | 119 | 171 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.5E-12 | 120 | 167 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 120 | 170 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-11 | 123 | 167 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.33E-9 | 123 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
METLYPTCFV PNSNWIMQQS KSNTEWTKEE NKRFESALAI YDETTPNRWF KVAEIIPGKS 60 VLDVIMQYKE LVADVSNIEA GLLPNTRRGY TSSFALEFVD HRNIQTFNKR GKSYDHERKK 120 GVPWTEEEHR RFLMGLEKYG KGDWRNISRN FVISKTPTQV ASHAQKYYLR QLSREKERKR 180 PSIHDITTVH LTNDEFLNNN NNDDKKSMCE ERLYMSSTST TDLLIGCWNN SIDEDLMAFG 240 QFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239940.1 | 0.0 | transcription factor DIVARICATA | ||||
Refseq | XP_004239941.1 | 0.0 | transcription factor DIVARICATA | ||||
Refseq | XP_025887035.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 3e-79 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A3Q7GP04 | 0.0 | A0A3Q7GP04_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g052610.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 5e-77 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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