PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g052410.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 400aa MW: 44712.3 Da PI: 4.3641 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.3e-20 | 72 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p + +r +lg+f+ta eAa a+++a+++++g Sopim05g052410.0.1 72 CKYRGVRQRT-WGKWVAEIREP-----HrgRRLWLGTFDTAIEAALAYDEAARAMYG 122 79*****999.**********6.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-14 | 72 | 122 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.53E-31 | 72 | 131 | No hit | No description |
PROSITE profile | PS51032 | 21.509 | 73 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-31 | 73 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-21 | 73 | 131 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.0E-34 | 73 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-10 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-10 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MMLPMDYTRK KKSRSRKDAP KNVAETLAKW KEVNEKLDAC DDDGRKPVRK VPAKGSKKGC 60 MKGKGGPDNG RCKYRGVRQR TWGKWVAEIR EPHRGRRLWL GTFDTAIEAA LAYDEAARAM 120 YGPCARLNLP DYYASSKESS KDDSSLPTVS RSDSNTASSF SEVCPAGDMM RGRANVPAAR 180 HEDRSIEIDG ARTGSNEIGT PLSSLREEAE DETKEVSDKS ETFTPLSSLR EQAEDEAKQV 240 LDKSETFEIK DEPAACSYDS WDIGQEDLGN FCLDDEMFDV NELLGMMDST PVDASAPSQD 300 VGFVPPKQEQ YAYDPSYQLH SAAYDANQLS NPAYQLDNAD DQFSNPLYQL DNAGVDTLEG 360 LQQMEQQSPI EVDYDFDFLR PGRQEDFHFC LDELDVLDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 63 | 133 | 5 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001316142.2 | 0.0 | ethylene response factor H.14 | ||||
Refseq | XP_010321452.1 | 0.0 | ethylene-responsive transcription factor 1 isoform X1 | ||||
TrEMBL | A0A1J0M687 | 0.0 | A0A1J0M687_SOLLC; Dehydration responsive element binding protein 2A-like protein | ||||
STRING | Solyc05g052410.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3701 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.1 | 1e-34 | DRE-binding protein 2A |