PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g051380.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 502aa    MW: 55822.3 Da    PI: 6.6918
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g051380.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.87.1e-10221277155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++  g  rk  + g ++ +++Aa+ ++ a++k++g
  Sopim05g051380.0.1 221 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqARKGRQ-GGYDKEDKAARSYDLAALKYWG 277
                         57*******************88885555446666.7799999*************98 PP
2AP249.41.1e-15322371355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Sopim05g051380.0.1 322 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 371
                         9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-7221277IPR001471AP2/ERF domain
CDDcd000188.03E-19221287No hitNo description
SuperFamilySSF541711.96E-13221287IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-11222286IPR001471AP2/ERF domain
PROSITE profilePS5103216.977222285IPR001471AP2/ERF domain
SMARTSM003802.0E-20222291IPR001471AP2/ERF domain
PRINTSPR003673.3E-6223234IPR001471AP2/ERF domain
CDDcd000185.34E-11320379No hitNo description
SuperFamilySSF541718.5E-18320380IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-18321379IPR001471AP2/ERF domain
PROSITE profilePS5103219.335321379IPR001471AP2/ERF domain
SMARTSM003803.1E-30321385IPR001471AP2/ERF domain
PfamPF008475.5E-10322371IPR001471AP2/ERF domain
PRINTSPR003673.3E-6361381IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MAPENNNWLS FSLSSMEMLN SSSSSSSMLQ SNAPSAPTHQ YYFADNFYPH GWMNVPKTHE  60
LMYSGDEKQI YHPNVFIDSQ IIHHQHHHHP PPKLEDFFGG ETETQDSSSL THIYDHHHHH  120
GGGAAAGDGG YFNNGQQDVN HNYSIAVGGF QTLPTNSGSE VDDSQVMGSE FATESSNEIY  180
PPIITLGVNN NSNTNSEKAI VTAVNSEGCK KITDTFGQRT SIYRGVTRHR WTGRYEAHLW  240
DNSCKREGQA RKGRQGGYDK EDKAARSYDL AALKYWGTTA TTNFPASDYT KEIEEMKHMT  300
KQEFIASLRR KSSGFSRGAS MYRGVTRHHQ QGRWQARIGR VAGNKDLYLG TFATEEEAAE  360
AYDIAAIKFR GLNAVTNFEM NRYDVEAIMK SSLPIGGAAK RLKISLESEQ KQSLNDNYQQ  420
TLHNGVNNSS SNNSINFGAI SPVSAIPCGL PFDANQPYYH HSFFPHLQYS SNDGGASDHT  480
SGTMPLLPPP AEIFIWPHQS Y*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240254.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-154AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A3Q7GIR40.0A0A3Q7GIR4_SOLLC; Uncharacterized protein
STRINGSolyc05g051380.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-136AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]