PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g051330.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 336aa    MW: 37761.1 Da    PI: 4.7362
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g051330.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57381.71.1e-2558152297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         +f+r+w+e Dei +LqGl+d  +++      d++ fy  +++ +s  ++ksql+eK+rrL+kKf+  +++ ++g + s+ ++hd+  ++ls
  Sopim05g051330.0.1  58 KFHRIWTEPDEIRFLQGLLDGSSENL-FFPRDLNVFYTRFSNTMSQPYTKSQLSEKLRRLRKKFRVISSRLSRGLDRSLLSPHDRALYDLS 147
                         699******************77776.4456************************************************************ PP

              DUF573  93 kkiWg 97 
                         k++W+
  Sopim05g051330.0.1 148 KQLWH 152
                         ****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.3E-2959152IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDSTLPLSQS TQITQPILPS SPNKLPIKRK ATDDPFTGAG AGDANGGVGE MGSDPPFKFH  60
RIWTEPDEIR FLQGLLDGSS ENLFFPRDLN VFYTRFSNTM SQPYTKSQLS EKLRRLRKKF  120
RVISSRLSRG LDRSLLSPHD RALYDLSKQL WHPDFSDTSP FNAEKSKKSN LVGVKVSFLP  180
NIYDPNRYGI VPYQDENGSN CNGVSVNEEV EQGEEEKEND GNIEFDDEDG KLSEVNVELD  240
TGEIGDERVE FSRVNGPVRV GIEFGVGDTA AKVVMDVFDE CLKDFRNGER SNLGGVMKEA  300
SSNEFEERWK EQRVAELNVL ARRMRLVLEH SLQSL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240258.10.0probable transcription factor At5g28040
TrEMBLA0A3Q7HF630.0A0A3Q7HF63_SOLLC; Uncharacterized protein
STRINGSolyc05g051330.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128221921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-16DNA-binding storekeeper protein-related transcriptional regulator