PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g051180.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23943.2 Da PI: 6.1462 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.2 | 6.3e-16 | 49 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr ++ +g+++AeIrd + ng r++lg+f +aeeAa a+++ + ++g Sopim05g051180.0.1 49 HYIGVRARP-WGKFAAEIRDSTRNG--IRVWLGTFNSAEEAALAYDQVAFLMRG 99 799******.**********44465..**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.03E-26 | 48 | 108 | No hit | No description |
PROSITE profile | PS51032 | 20.086 | 49 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-21 | 49 | 109 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.3E-32 | 49 | 113 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-11 | 49 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.5E-28 | 49 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MILKIQDEKQ SSDSVESSIS LEDTSSSDTY SFNKENGFHS ERPKKEIKHY IGVRARPWGK 60 FAAEIRDSTR NGIRVWLGTF NSAEEAALAY DQVAFLMRGP TTCLNFPVER VSKMLEETEI 120 CNFFKNGLSP AAALKEKHKR RSSSNISRKK KQKVNHEEEI NNNNNNNNNN VDNNNNNNNN 180 NNNNNNNVFT FEDLGSELLD ELLSEYSNSN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-28 | 48 | 108 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 149 | KHKRRSSSNISRKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321614.2 | 1e-151 | ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | A0A3Q7HF34 | 1e-110 | A0A3Q7HF34_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g051180.1.1 | 1e-151 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 7e-37 | ethylene response factor 1 |