PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g050830.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 28692.9 Da PI: 5.4014 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.6e-18 | 76 | 125 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ ta++Aa+a++ a+++++g Sopim05g050830.0.1 76 TYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAQMAARAHDVAALAIKG 125 69****888.**********854...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-21 | 76 | 134 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.011 | 76 | 133 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-31 | 76 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-12 | 76 | 125 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-36 | 76 | 139 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.97E-33 | 77 | 135 | No hit | No description |
PRINTS | PR00367 | 3.1E-10 | 77 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 99 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MKNQEEIINL KNRHDFISNG LSFPSNIATS PSSSSSSSSF SSNNALVSKK CQSSKKIEEE 60 KKKKKINNDD EDKHPTYRGV RKRSWGKWVS EIREPKKKSR IWLGTYPTAQ MAARAHDVAA 120 LAIKGCSAHL NFPHLVDQYP HPASTCHKDI QAAAAKAAAI PFPEEDEEEE DQIESDQVEL 180 RNCHPSTNLF LENAKESLNS PSREDDDTFF DLPDLSIDVV DQTNSYWCTM STWQQLIGAD 240 TMVYRLDEPF LWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 74 | 134 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004240059.1 | 0.0 | ethylene-responsive transcription factor ERF038-like | ||||
Swissprot | Q8LBQ7 | 1e-49 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | M1AA09 | 1e-129 | M1AA09_SOLTU; Uncharacterized protein | ||||
STRING | Solyc05g050830.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-43 | ERF family protein |
Publications ? help Back to Top | |||
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