PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g050790.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 21960.9 Da PI: 10.5027 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 8.1e-18 | 63 | 113 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ g +r +lg++ t+e+Aa a+++ + kl+g Sopim05g050790.0.1 63 RYRGVRRRP-WGKFAAEIRDPKKKG--ARLWLGTYVTPEDAALAYDRTAFKLKG 113 8********.**********96643..************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.26E-30 | 62 | 123 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-21 | 63 | 122 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.4E-34 | 63 | 127 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-12 | 63 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.617 | 63 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-30 | 63 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-12 | 64 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-12 | 103 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MHQENSTQFD LSILDSPLEH QFNGFNLESI SFDRSIDHTW EKIDKNEDNI PRSSSQVSNN 60 WKRYRGVRRR PWGKFAAEIR DPKKKGARLW LGTYVTPEDA ALAYDRTAFK LKGTRALLNF 120 PHLIDTNVAE LNRVRPKQRS RLSEIIKGEE IPSPKRRNPQ LINNIAKVNS IIHMFEITSL 180 AFHPQGENK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-29 | 62 | 127 | 4 | 69 | ATERF1 |
3gcc_A | 2e-29 | 62 | 127 | 4 | 69 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321615.1 | 1e-139 | ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A3Q7HEW4 | 1e-127 | A0A3Q7HEW4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g050790.1.1 | 1e-138 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 3e-38 | ethylene-responsive element binding factor 13 |