PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g050220.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 417aa    MW: 44923.8 Da    PI: 9.1953
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g050220.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.21.1e-20273335163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkre+rkq+NRe+ArrsR+RK+ae eeL+  v++L++eN aL++e+++ +++++klk e+
  Sopim05g050220.0.1 273 ERELKREKRKQSNRESARRSRLRKQAEAEELAVQVQSLTSENLALRSEINKFTENSEKLKFEN 335
                         89*********************************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.8E-28193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.2E-14131248No hitNo description
Gene3DG3DSA:1.20.5.1705.0E-17268333No hitNo description
PfamPF001703.5E-19273335IPR004827Basic-leucine zipper domain
SMARTSM003382.3E-18273337IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.208275332IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.06E-10276332No hitNo description
CDDcd147022.90E-19278326No hitNo description
PROSITE patternPS000360280295IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGNIEDRKSS TPEKSFSTAP DQSSFHVYPD WAVMQAYYAH RVAVPPYVSS AVAPGHAPHP  60
YMWGPLPPMF PPYGTPYAGV YAHGGVYPHS GVPIVFRPQA HGMTSSPVVS QTKNTASLGM  120
DTSAKSSGNS DQGLTSQSKG FDGLGISIGN HSVDNGAGTD HGPSQSGQTE GSSDGSNIHT  180
TEMREHSKKR SRESTPNNSG EGKSQRMCSP QRTREVNGAS ENGIGIAVNP GIIAEKLAGT  240
TFSPIMTTTP LVKSSPTSQI CPAMPGEVWL QNERELKREK RKQSNRESAR RSRLRKQAEA  300
EELAVQVQSL TSENLALRSE INKFTENSEK LKFENVGLME RLKNKQGQAK EVTLGMIDDK  360
RLKPVSTADL LARVNNNNGS FSRTNEDGEV HDSTSGAKLH QLLDASSRTD HAVAAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289295RRSRLRK
2289296RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9147571e-128CU914757.7 S.lycopersicum DNA sequence from clone LE_HBa-34P15, complete sequence.
GenBankHG9755171e-128HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321523.10.0transcriptional activator TAF-1-like isoform X1
SwissprotQ990891e-122CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A3Q7HEK50.0A0A3Q7HEK5_SOLLC; Uncharacterized protein
STRINGSolyc05g050220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-88G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]