PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g048830.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 320aa    MW: 35641.6 Da    PI: 6.5115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g048830.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde+lv+++k +G g+W++ ++  g+ R++k+c++rw +yl
  Sopim05g048830.0.1 14 KGPWTPEEDEKLVEYIKNHGHGSWRSLPHLAGLARCGKSCRLRWTNYL 61
                        79********************************************97 PP

2Myb_DNA-binding45.22.1e-1467112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ +E++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Sopim05g048830.0.1  67 RGPFSHDEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                         89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129425.578965IPR017930Myb domain
SuperFamilySSF466892.58E-3011108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002498.0E-171461IPR001005SANT/Myb domain
CDDcd001671.90E-111661No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2465116IPR009057Homeodomain-like
SMARTSM007172.7E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.21466116IPR017930Myb domain
PfamPF002491.8E-1367112IPR001005SANT/Myb domain
CDDcd001671.32E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTPE EDEKLVEYIK NHGHGSWRSL PHLAGLARCG KSCRLRWTNY  60
LRPDIKRGPF SHDEEKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLSMG  120
VDPQTHEPSS APNGQMITPP TSLAARHMAQ WESARLEAEA RLSRESQPLV PSSVGRSGTD  180
YFLRIWNSEV GESFRKFNKK EGRTTCESPA SQASSSTKFG STSGVTTEMD VSFAAYQNEE  240
TEWKNSQPYT EDVLQGYDDT SSSSGLEDSS ESALQLLLDF PSNNDMSFLG HSDTYSLYPE  300
FLSESSFKCS SAQHEVGFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240108.10.0transcription factor MYB41-like
SwissprotQ9M2D91e-120MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A3Q7GMQ50.0A0A3Q7GMQ5_SOLLC; Uncharacterized protein
STRINGSolyc05g048830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-119myb domain protein 17