PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g015550.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YB | ||||||||
Protein Properties | Length: 220aa MW: 24498 Da PI: 5.3403 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 132.7 | 1.2e-41 | 49 | 141 | 3 | 95 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 e drf+Pi nv+rim+++lP +a is+++k vqec+sefi+fvt++a+d cq+e+r+ti ++dll al ++Gf+dy+epl++yl++yre+ Sopim05g015550.0.1 49 EADRFMPIENVVRIMRNILPPHAMISDESKVAVQECISEFIGFVTDQANDDCQHEQRNTIMAEDLLSALKKIGFDDYIEPLTLYLHRYREV 139 78****************************************************************************************9 PP NF-YB 94 eg 95 +g Sopim05g015550.0.1 140 DG 141 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.0E-39 | 47 | 147 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.19E-31 | 51 | 145 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-19 | 53 | 117 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.4E-10 | 81 | 99 | No hit | No description |
PRINTS | PR00615 | 4.4E-10 | 100 | 118 | No hit | No description |
PRINTS | PR00615 | 4.4E-10 | 119 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MKPVGGVVSV TIKFCRLLIR GTERGLRQAI LLHPTNPSNL EDFICPFPEA DRFMPIENVV 60 RIMRNILPPH AMISDESKVA VQECISEFIG FVTDQANDDC QHEQRNTIMA EDLLSALKKI 120 GFDDYIEPLT LYLHRYREVD GGADRSLKRE SLLLKRPMVC PASGYSITPN HLPPNLDMNH 180 PPPMGDDFMK EDASNTSTSR CTVSTVDNEV NSLAKGGKE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-43 | 49 | 138 | 8 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321196.1 | 1e-146 | nuclear transcription factor Y subunit B-6-like | ||||
Swissprot | Q84W66 | 4e-45 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A3Q7HA76 | 1e-162 | A0A3Q7HA76_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g015550.1.1 | 1e-162 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 1e-47 | nuclear factor Y, subunit B6 |