PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g013430.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 211aa    MW: 23938.8 Da    PI: 10.3718
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g013430.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.6e-152570247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +rW++eE+  ++++ ++lG+g+W+ Ia+ +   Rt+ q+ s+ qky
  Sopim05g013430.0.1 25 KRWSEEEHRAFLCGLEKLGTGNWSEIAKQFVPSRTRTQISSHAQKY 70
                        69****************************99*************9 PP
2Myb_DNA-binding37.94.2e-12127171247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         g+WT+eE+e ++ + ++ G + W+++++++ + Rt+ q+ s+ qky
  Sopim05g013430.0.1 127 GKWTEEEHEAFLIGMEKVGRN-WTRVSKEFVLSRTPTQITSHAQKY 171
                         89*****************66.***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-131872IPR009057Homeodomain-like
PROSITE profilePS5129419.4071975IPR017930Myb domain
SuperFamilySSF466896.9E-162175IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-142272IPR006447Myb domain, plants
SMARTSM007171.2E-112373IPR001005SANT/Myb domain
PfamPF002494.5E-132570IPR001005SANT/Myb domain
CDDcd001671.94E-102671No hitNo description
PROSITE profilePS5129416.269121176IPR017930Myb domain
SuperFamilySSF466896.1E-14122176IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-13124173IPR006447Myb domain, plants
SMARTSM007171.0E-7125174IPR001005SANT/Myb domain
PfamPF002491.0E-9127171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-10127171IPR009057Homeodomain-like
CDDcd001675.07E-5128172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGDSSNRSFK LFGVKISNDE KKKGKRWSEE EHRAFLCGLE KLGTGNWSEI AKQFVPSRTR  60
TQISSHAQKY FAWQKTRNDK AAKSTSNVEL SSSTSGKEER PLSPMPISYN DSNNGDSVNL  120
LSRKQEGKWT EEEHEAFLIG MEKVGRNWTR VSKEFVLSRT PTQITSHAQK YFEGLRNDRG  180
PKRSVFDITL ERQSTTTCPE SVTKAKQVLK *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2327030.0AC232703.2 Solanum lycopersicum chromosome 05 clone C05HBa0190L02, complete sequence.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239479.11e-155transcription factor DIVARICATA-like
SwissprotQ9FKF92e-18M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A3Q7GG851e-154A0A3Q7GG85_SOLLC; Uncharacterized protein
STRINGSolyc05g013430.1.11e-154(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1855144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.16e-20MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]