PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g009250.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 376aa MW: 41540.6 Da PI: 8.3594 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.8 | 1.7e-10 | 136 | 176 | 6 | 50 |
AP2 6 VrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaar 50 Vr +k +g+++ eIrd + + kr++lg+f t+eeA + + + Sopim05g009250.0.1 136 VRKRK-SGKFATEIRDpF-----SkKRIWLGTFNTPEEASEVYQSKK 176 89888.7*********66.....44**************99886655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.973 | 127 | 192 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.75E-14 | 136 | 172 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-10 | 136 | 180 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-14 | 136 | 181 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-6 | 136 | 186 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MKSKIKQDCI DENEVIEIER TIRVKISDPD ATESSSDDEK QEKRPKIIVH EIVQKKVKIQ 60 SFLLNSKNPL DFYQLPPPRV RKRKYQKKGV SAKSGNPPLM ADSQNLDLTK VKTRFSLKNR 120 SPLSFEQSSG KLPPMVRKRK SGKFATEIRD PFSKKRIWLG TFNTPEEASE VYQSKKLEFQ 180 EKLEKARNAN VDKVISAKFE LGSSSSSAPP LMADYQNTDS SNESVDRLKK AKNAKENMVI 240 SAKFELGSSS SSDPSLIADS QNTDSSNESG DILKKSKNAK EKMVIFANSE PGSSPSEPIL 300 MVDEIDEQLN KAINANVAKG ISSKSELGSS SSDQVDAQTS DSSNGVEESD EDLWMGQWIQ 360 ISGLMDDVSG SFVGT* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238921.1 | 0.0 | ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A3Q7GFC0 | 0.0 | A0A3Q7GFC0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g009250.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15531 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 9e-15 | ERF domain protein 11 |