PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g007870.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 418aa    MW: 46562.4 Da    PI: 7.5517
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g007870.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-16120165147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  Sopim05g007870.0.1 120 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 165
                         899*****************************.***********996 PP
2Myb_DNA-binding54.82.2e-17172215146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Sopim05g007870.0.1 172 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 215
                         678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.413115166IPR017930Myb domain
SMARTSM007172.4E-14119168IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-27120213IPR009057Homeodomain-like
PfamPF002491.5E-15120165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-26121173IPR009057Homeodomain-like
CDDcd001672.65E-13123164No hitNo description
PROSITE profilePS5129426.846167221IPR017930Myb domain
SMARTSM007174.4E-14171219IPR001005SANT/Myb domain
PfamPF002495.8E-14172214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-20174220IPR009057Homeodomain-like
CDDcd001672.51E-11174214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSSTSSSCSC SPMGTSMGMF FADMNSLSIN TPESLDEGKG RRGSWDFQFL NKGGSFFSSR  60
SLDEAQNSEE NNESIDLNAS CFNDEKQITM HTTFNSNNNS SSSGCNGKET ENGQSKLCAR  120
GHWRPAEDAK LKELVAIYGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI NRRAFSEEEE  180
ERLMAAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIMARK YREQSSAYRR RKMGQFVYRR  240
STTTVVEEAD NSSGQNSVNH FSMKMNNNNG PNGWVVYGPN GSPHMAASAG EAATPSSTNN  300
VPLYSPYSPF AAPPFDSLPA GHCGNEMINV LNQQGGRSWD RQREVTHQHP SNSLMMMNNM  360
QQDQSQYVLQ FPYVTQISSS PSTTEQGLVK EDKRSNNNSD NTTIAPPFID FLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-321202207107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
GenBankJX5224780.0JX522478.1 Solanum lycopersicum R2R3 MYB gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307310.10.0transcription factor MYB117
TrEMBLK4BWW20.0K4BWW2_SOLLC; R2R3 MYB
STRINGSolyc05g007870.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-76myb domain protein 105