PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g007710.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 339aa    MW: 38649.4 Da    PI: 8.5457
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g007710.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151158148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+  +  +G g+W++ +++ g+ R++k+c++rw +yl
  Sopim05g007710.0.1 11 KGPWTPEEDQKLLSFIDTYGCGSWRALPAKAGLQRCGKSCRLRWINYL 58
                        79********************************************97 PP
2Myb_DNA-binding47.54.3e-1564107146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++ +E+  +++++++lG++ W++Ia +++  Rt++++k++w++
  Sopim05g007710.0.1  64 RGKFSLQEERTIIQLHALLGNR-WSAIATYLP-SRTDNEIKNYWNS 107
                         89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.579658IPR017930Myb domain
SuperFamilySSF466891.41E-298105IPR009057Homeodomain-like
SMARTSM007174.0E-111060IPR001005SANT/Myb domain
PfamPF002495.6E-151158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-241265IPR009057Homeodomain-like
CDDcd001672.29E-91358No hitNo description
PROSITE profilePS5129424.37259113IPR017930Myb domain
SMARTSM007173.5E-1563111IPR001005SANT/Myb domain
PfamPF002491.7E-1464107IPR001005SANT/Myb domain
CDDcd001678.08E-1066109No hitNo description
Gene3DG3DSA:1.10.10.609.4E-2566113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRFDKEGLK KGPWTPEEDQ KLLSFIDTYG CGSWRALPAK AGLQRCGKSC RLRWINYLRP  60
DIKRGKFSLQ EERTIIQLHA LLGNRWSAIA TYLPSRTDNE IKNYWNSRLK KRLTKMGIDP  120
MTHKPNGAGS SKYVANLSHM AEWESARLEA EARLVRKSKI LFNNNNNSHN YNINPSTISQ  180
QLPYYQQLPC LDRLKAWQIA STKLPTINDI SHAILRNNSK NKKLDSSIPS SSLNSSENIF  240
ANNAPTTTKV DDDDHQNLQN LSTINSCFED DQLLQTELPS FMQEFSGVFP EYAQNSTNGL  300
QVDNFMGSYS EDFEDNKLLI NWNNFPNYLV NSPIDCIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2991135108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2387430.0AC238743.2 Solanum lycopersicum chromosome 05 clone C05HBa0099K13, complete sequence.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239393.10.0transcription factor MYB106-like
SwissprotQ9LE631e-89MY106_ARATH; Transcription factor MYB106
TrEMBLA0A3Q7H6050.0A0A3Q7H605_SOLLC; Uncharacterized protein
STRINGSolyc05g007710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.12e-88myb domain protein 106