PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g007690.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 343aa    MW: 39199.2 Da    PI: 8.5504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g007690.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd++l+  + ++G g+W+  +++ g+ R++k+c++rw +yl
  Sopim05g007690.0.1 14 KGPWTHEEDQKLLSFIDKHGCGSWRGLPAKAGLQRCGKSCRLRWINYL 61
                        79********************************************97 PP
2Myb_DNA-binding46.58.3e-1567110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++ +E+  +++++++lG++ W++Ia +++  Rt++++k++w++
  Sopim05g007690.0.1  67 RGKFSLQEERTIIHLHALLGNR-WSAIATYLP-SRTDNEIKNYWNS 110
                         89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.487961IPR017930Myb domain
SuperFamilySSF466894.79E-2911108IPR009057Homeodomain-like
SMARTSM007175.2E-101363IPR001005SANT/Myb domain
PfamPF002491.8E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-221568IPR009057Homeodomain-like
CDDcd001677.66E-91661No hitNo description
PROSITE profilePS5129424.12362116IPR017930Myb domain
SMARTSM007179.0E-1566114IPR001005SANT/Myb domain
PfamPF002493.6E-1467110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2469116IPR009057Homeodomain-like
CDDcd001671.15E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRSKYCDEE GLKKGPWTHE EDQKLLSFID KHGCGSWRGL PAKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEERTIIH LHALLGNRWS AIATYLPSRT DNEIKNYWNS RLKKRLTKMG  120
IDPMTHKPSD AGSSKYVANL SHMAEWESAR LEAEARLVRK SKILFNNNNN THNYNINPST  180
ISQQLPHYYQ QLPCLDILKA WQMTSTKLPT INDISHAILR SNLKNKKLDS SIQSSTLNSS  240
ENIFAKDAPT TTKFDVDDDQ NLHNLSTINS CFEDDQLLQT ELPSFMQEFS GVFPEYTQNS  300
TNGLQVDNIM GSFYGDFEDN KLINWNNFPN YLVNSPIGSP VF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2387430.0AC238743.2 Solanum lycopersicum chromosome 05 clone C05HBa0099K13, complete sequence.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239392.10.0transcription factor MYB106-like
SwissprotQ9LE635e-91MY106_ARATH; Transcription factor MYB106
TrEMBLA0A3Q7GDP80.0A0A3Q7GDP8_SOLLC; Uncharacterized protein
STRINGSolyc05g007690.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-90myb domain protein 16