PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g007180.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 306aa MW: 34860.6 Da PI: 6.3521 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7.1e-18 | 79 | 132 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Sopim05g007180.0.1 79 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 132 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.3 | 3.7e-42 | 78 | 170 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr++da+k+en++L++++++L++e+ Sopim05g007180.0.1 78 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYELLKRQFDAIKAENDALQTQNQKLHAEI 168 69**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ Sopim05g007180.0.1 169 MS 170 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-19 | 55 | 135 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.18E-19 | 70 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 74 | 134 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 77 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.53E-15 | 79 | 135 | No hit | No description |
Pfam | PF00046 | 3.1E-15 | 79 | 132 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.2E-5 | 105 | 114 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 109 | 132 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 114 | 130 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.2E-16 | 134 | 175 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MAFFPTNFML QTPHNEDEHQ PSTSLNPILP SCSPQDFHGI ASFLGKRSMS FSGMDGNNGC 60 EENHGEDDLS DDGSQAGEKK RRLNMEQVKT LEKNFELGNK LEPERKMQLA RALGLQPRQI 120 AIWFQNRRAR WKTKQLEKDY ELLKRQFDAI KAENDALQTQ NQKLHAEIMS LKNREQPTES 180 INLNKETEGS CSNRSENSSE IKLDISRTPA IDSPLSNHHP NISSRPFFPP SMIRSNNNNN 240 NNGVVVPHQL FHINSSSSRQ DLKLMDQNTT TNNSSSVKEE SLSNMFCGID DQTSFWPWLE 300 QQHFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 134 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF011556 | 0.0 | AF011556.1 Lycopersicon esculentum jasmonic acid 1 (LEJA1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001296720.1 | 0.0 | jasmoni isoform 2 | ||||
Swissprot | Q8LC03 | 1e-120 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A3Q7GDG1 | 0.0 | A0A3Q7GDG1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g007180.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-123 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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