PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g005300.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 483aa MW: 54013.3 Da PI: 6.0837 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.3e-13 | 303 | 346 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+ri++++++Lr l+P+ +K++K++iL ++YI++Lq Sopim05g005300.0.1 303 VTERKRRNRIKDGLFTLRALVPNI-----TKMDKVAILGDSIDYINELQ 346 57*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.0E-19 | 8 | 156 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.205 | 296 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-16 | 298 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.51E-13 | 298 | 350 | No hit | No description |
SMART | SM00353 | 1.4E-14 | 302 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-16 | 303 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 304 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MEKALEWLRP LVDSKNWEYC VVWKFGDDPS RFIEWMGCCC SGANGVDVNV KRENGGKQTF 60 SSLCRDIQVQ HPIRTKACEA LAHFPHSISL YSGIQAEVVT SNEPKWINHA EISNSNLSHE 120 LKGTLVLIPV AGGLVELYNS KMIYKDQKTI NFIINRFKLG SEEANSSVAQ KEDQVLDFFP 180 YEKSNFCAPL LQYATSFPSS APHISQVSES SANPSIQGSS TGSIPSNELT LCHSPPDHLS 240 RNVPLSQSTE GYFEHTELQC SGNLSRMEDT IFPWKQENYI VAGDMFSMGK KRQKGPYQSK 300 NLVTERKRRN RIKDGLFTLR ALVPNITKMD KVAILGDSID YINELQEKVK LYKIELNKIE 360 AEVTNNESTP EMVLSDMTEM SKVTGQTNEK TQISVNTTDR TRMEVEVNQI GAREFLLKVS 420 GSRKPGGFTQ LMEAMNYLGL ELVNVSCTTS GGEIVSVYIV EANVDRFIDA QKLRSSLIEL 480 TS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 288 | 294 | GKKRQKG |
2 | 289 | 308 | KKRQKGPYQSKNLVTERKRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC188781 | 0.0 | AC188781.2 Lycopersicon esculentum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0005B15 complete sequence. | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010320569.1 | 0.0 | transcription factor bHLH90 isoform X1 | ||||
TrEMBL | K4BW61 | 0.0 | K4BW61_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g005300.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9929 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10610.1 | 7e-53 | bHLH family protein |