PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g005090.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TALE | ||||||||
Protein Properties | Length: 321aa MW: 36695.9 Da PI: 4.5452 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.5 | 5.2e-09 | 263 | 295 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+++++ LA+++gL+ +q+ +WF N+R ++ Sopim05g005090.0.1 263 PYPTEADKNSLAESTGLDPKQINNWFINQRKRH 295 8*****************************885 PP | |||||||
2 | ELK | 31.3 | 4.6e-11 | 215 | 236 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrK++++L+sLk EFs Sopim05g005090.0.1 215 ELKDRLLRKFGSHLSSLKLEFS 236 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 9.3E-18 | 88 | 132 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.5E-20 | 90 | 131 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.3E-25 | 138 | 189 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.0E-24 | 141 | 188 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 10.196 | 215 | 235 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.3E-7 | 215 | 236 | IPR005539 | ELK domain |
SMART | SM01188 | 8.4E-6 | 215 | 236 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.908 | 235 | 298 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-19 | 236 | 309 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-13 | 237 | 302 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-28 | 240 | 299 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.19E-12 | 247 | 299 | No hit | No description |
Pfam | PF05920 | 2.7E-17 | 255 | 294 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 273 | 296 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MDDEIMYGFN STRDDYADKA LMSPENLMMQ TEYNNFHNYT NSSIMFGSDP IQLSSEQTLQ 60 NNIYRGNCCG GSGSGGDNNN NNDEDGSNII KAKILSHPYY PKLLNAYIDC QKVGAPAGIV 120 NLLEEIRQQN DFRKPNATCL CIGADPELDE FMETYCDILL KYKSDLSRPF DEATTFLNKI 180 EMQLGNLCKD DDEEEEEELS CGDASSSMRR SEDNELKDRL LRKFGSHLSS LKLEFSKKKK 240 KGKLPKEARQ MLLAWWDDHF RWPYPTEADK NSLAESTGLD PKQINNWFIN QRKRHWKPSE 300 NMQLAVMDNL SAQFFSSDVD * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LEU76408 | 0.0 | U76408.1 Lycopersicon esculentum knotted 3 protein (TKn3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233927.1 | 0.0 | knotted 3 protein | ||||
Swissprot | Q84JS6 | 1e-110 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A3Q7H4G7 | 0.0 | A0A3Q7H4G7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g005090.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA753 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 3e-97 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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