PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim04g077490.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 653aa MW: 71588.4 Da PI: 7.4398 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.7e-16 | 303 | 362 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Sopim04g077490.0.1 303 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 362 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 46 | 1.3e-14 | 405 | 456 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Sopim04g077490.0.1 405 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 456 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.63E-22 | 303 | 370 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-16 | 303 | 372 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.9E-13 | 303 | 362 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-29 | 304 | 376 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 304 | 370 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-16 | 304 | 371 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 305 | 316 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.02E-26 | 405 | 466 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-18 | 405 | 466 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.2E-10 | 405 | 456 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.124 | 406 | 464 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-34 | 406 | 470 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-18 | 406 | 464 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 446 | 466 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MKSMNDDSRS SNNNISNNNS AAANTNWLGF SLTPHMKMEV TNSSDTQHQH QFAQSFYLSS 60 SPPPPMNVST TSALCYENNP FHSTLSVMPL KSDGSLCIME ALSRSHADAM VQSSSPKLED 120 FLGGASMGNS QYGSHDREAM ALSLDSLYYH QNEEEIQVHS HHPYYSPMHC HGMYHQETLL 180 EETKPTQISN CEAQMTGNEL KSWGHYAEQH AIDQHINATC SMVAAAAAAA SGGGGGTSGC 240 NELQSLSLSM NPGSQSSCVT PRQISPSGLE CVAVESKKRA SGKVAQKQPV HRKSIDTFGQ 300 RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QTRKGRQVYL GGYDMEEKAA RAYDLAALKY 360 WGPSTHINFP LENYQKELDD MKNMTRQEYV AHLRRKSSGF SRGASIYRGV TRHHQHGRWQ 420 ARIGRVAGNK DLYLGTFSTQ EEAAEAYDVA AIKFRGVNAV TNFDISRYDV EKIMASNTLP 480 AGELAKRTKE RESIEYNNNT GGVGGQKNEE CVDNNNNGTI TDWKMVLYQT SNPSLGSSYR 540 NPTSFSMALQ DLIGIDSMTN SNNHHHATIL DHEQNKIGNP FSNASSLVTS LGSSREASPD 600 KSATAASLVF AKPTKFAVPT ATSVNACIPS AQLRPIPVSM AHLPVFAALN DA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB181203 | 0.0 | AB181203.1 Solanum lycopersicum LeANT mRNA for AINTEGUMENTA homolog, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001287930.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT-like | ||||
Swissprot | Q38914 | 1e-162 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A060PVV0 | 0.0 | A0A060PVV0_SOLLC; AINTEGUMENTA homolog | ||||
STRING | Solyc04g077490.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-158 | AP2 family protein |