PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim04g074700.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 311aa MW: 35254.8 Da PI: 4.6908 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4.1e-19 | 54 | 106 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ +q+++Le+ Fe +++++ +++ ++A++lgL+ rq+ +WFqNrRa++k Sopim04g074700.0.1 54 KRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQELGLQPRQIAIWFQNRRARWK 106 4567889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124 | 7.1e-40 | 53 | 143 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrl +qv++LE+ Fe ++kL+p+rKv++a+eLglqprq+a+WFqnrRAR+ktkqlE+dy+ Lk++y+al+++ +++e+e+e L +elk Sopim04g074700.0.1 53 KKRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQELGLQPRQIAIWFQNRRARWKTKQLERDYNILKSNYEALQHNYTKVEQEKEGLITELK 143 9*************************************************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.325 | 48 | 108 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.98E-19 | 49 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.0E-19 | 51 | 112 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.11E-17 | 53 | 109 | No hit | No description |
Pfam | PF00046 | 2.4E-16 | 54 | 106 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-20 | 59 | 106 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.4E-5 | 79 | 88 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 83 | 106 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.4E-5 | 88 | 104 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.2E-15 | 108 | 149 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MKRFSFSDSS GKLLYPTEEK NTENLGYSNE FQAMLDGLED EDGIEESGCG TGKKRRLRVD 60 QVQALEKIFE VDNKLDPDRK VKIAQELGLQ PRQIAIWFQN RRARWKTKQL ERDYNILKSN 120 YEALQHNYTK VEQEKEGLIT ELKGLKEKLG EETLLSPVFQ RPQEILNKLK NSSDFVDSKD 180 GSSDSDSSGV MNEETYNIST LNYQQLMPKV SSYSNSLDHL SLSSSTYTQL MDPRASNSTS 240 SSMRAYNNNN NNNDNNNSNN QQQQQAVGRI EEQNGFTTED SCNIYSVDQA PNLYWVGAWL 300 LGAYQTPCGG * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 108 | RRARWKTKQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | Y17306 | 0.0 | Y17306.1 Lycopersicon esculentum mRNA for homeodomain protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158857.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
TrEMBL | A0A3Q7G7K7 | 0.0 | A0A3Q7G7K7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g074700.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12939 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 2e-39 | homeobox protein 16 |