PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim04g072460.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 362aa MW: 40880.5 Da PI: 7.2366

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim04g072460.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.5	4.6e-11	77	107	3	33
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 ++k++rr+++NReAAr+sR RKka++++Le+ Sopim04g072460.0.1 77 SDKVQRRLAQNREAARKSRMRKKAYVQQLET 107 79***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.2E-6	75	135	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.3E-10	75	119	No hit	No description
PROSITE profile	PS50217	9.002	77	121	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-7	77	109	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.81E-7	79	114	No hit	No description
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.2E-28	165	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MTSPTTQFAP TRRMGIYEPF HQMSVWEDAF RGDIMPSADA CMVSHPNDRP DDKSGYTSGE 60 QHMPSGSGDN QGPRSSSDKV QRRLAQNREA ARKSRMRKKA YVQQLETSRL KLAQLELELE 120 RARQQGLYML GSNSNMGLLG TINPGIAAFE IEYSHWVEEQ QKKNAELRSI LQSPVSDMEL 180 QLLVENVLSH YFNLFRMKAD AAKADVFYLM SGVWRTSVER FFLWIGGFKP SELINVVMPQ 240 LEPLADQQII KVCNLRHCCQ QAEDALTQGM DKLQQTLAQS ILNMNTGAGN YTSQMVSSME 300 NLEALESFVN QADHLRQQTL QQMSIILTTH QAARGLLAFG EYVQRLRALS SLWAARPREP 360 T*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MTSPTTQFAP TRRMGIYEPF HQMSVWEDAF RGDIMPSADA CMVSHPNDRP DDKSGYTSGE  60
QHMPSGSGDN QGPRSSSDKV QRRLAQNREA ARKSRMRKKA YVQQLETSRL KLAQLELELE  120
RARQQGLYML GSNSNMGLLG TINPGIAAFE IEYSHWVEEQ QKKNAELRSI LQSPVSDMEL  180
QLLVENVLSH YFNLFRMKAD AAKADVFYLM SGVWRTSVER FFLWIGGFKP SELINVVMPQ  240
LEPLADQQII KVCNLRHCCQ QAEDALTQGM DKLQQTLAQS ILNMNTGAGN YTSQMVSSME  300
NLEALESFVN QADHLRQQTL QQMSIILTTH QAARGLLAFG EYVQRLRALS SLWAARPREP  360
T*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014216	0.0	BT014216.1 Lycopersicon esculentum clone 133394F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004237865.1	0.0	transcription factor TGA1 isoform X2
Refseq	XP_010320138.1	0.0	transcription factor TGA4 isoform X1
Refseq	XP_010320139.1	0.0	transcription factor TGA1 isoform X2
Swissprot	Q39237	1e-152	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A3Q7G6X7	0.0	A0A3Q7G6X7_SOLLC; Uncharacterized protein
STRING	Solyc04g072460.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-141	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]