PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g071770.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 453aa    MW: 49582.8 Da    PI: 6.524
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g071770.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.4e-20209258255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aaka++ a+++++g
  Sopim04g071770.0.1 209 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAAKAYDDAALRFRG 258
                         7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-32209267IPR001471AP2/ERF domain
PROSITE profilePS5103225.475209266IPR001471AP2/ERF domain
PfamPF008471.9E-13209258IPR001471AP2/ERF domain
CDDcd000185.27E-21209268No hitNo description
SuperFamilySSF541714.12E-22209267IPR016177DNA-binding domain
SMARTSM003804.2E-36209272IPR001471AP2/ERF domain
PRINTSPR003672.2E-11210221IPR001471AP2/ERF domain
PRINTSPR003672.2E-11232248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MCILKVANQG DSGKYDRIPS TAGDSETTTN EGIPQPYEQS QSFEEMLQQQ IQQETEYLMS  60
ESANPMYTGY SQSRDMSAMV TALTHVVSGR REAEWGYRPD ISGVTTSFGG GGSGSIYSAN  120
SPSSSSSGSW AGQKRRRDQE ESVTGEQAQR GYGGIGEFKN GESSSSVKLE EDTSLATPQT  180
SSISTTTASQ TPPQASEVTG EETGERKRRY RGVRQRPWGK WAAEIRDPHK AARVWLGTFD  240
TAEAAAKAYD DAALRFRGNR AKLNFPENVR LLPQQQQQPT TRLAISTSSS TAAPRFQLMS  300
AASTRSPSPS PFFFQSYNQP PRQSDQQHQN QQQQLFQSSD MARDYWEYSQ LLQNPIDFHG  360
GQQSSSLLEQ MLLASSLGVL HSHTFPSSSS SSLATSAASS TTSPAYPLFY SAQQSRFFQP  420
QTHQNQSNSS SNSSNFPPPF WTSSGHYPPS SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22208269163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237817.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A3Q7G6K10.0A0A3Q7G6K1_SOLLC; Uncharacterized protein
STRINGSolyc04g071770.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-28ethylene response factor 110