PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim04g071510.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 309aa MW: 33874.1 Da PI: 7.273 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.9 | 1.2e-14 | 225 | 274 | 2 | 51 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++l+r+rr++kNRe+A rsR+RK+a++ eLe + Le+eN++L ke ee Sopim04g071510.0.1 225 AALQRQRRMIKNRESAARSRERKQAYQVELESIAVRLEEENEQLLKEKEE 274 689*****************************************998765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-9 | 224 | 286 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.7E-13 | 225 | 274 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.45 | 226 | 277 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 3.71E-16 | 228 | 274 | No hit | No description |
SuperFamily | SSF57959 | 1.62E-9 | 228 | 278 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.2E-12 | 229 | 275 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 231 | 246 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MASTKLMASS ASRNSDRRKS SAASSSSSST MPNDLLNQQY SNNGSNNSSN LEATSMTVDG 60 FLRNVYGEGQ GTEANTLLNA NITLLDAAGA ITPISDSETA TVSGIPLVRR TVDDVWREIV 120 EGKREQRRAA VAGCKEEAVD EIMTLEDFLV KAGAVEEEAL AGEGPVQGEV KVELGTERLS 180 GGIFAFDSPY MAMPQQSVQG YGNGIDVIGG GRGKRKAILE PLDKAALQRQ RRMIKNRESA 240 ARSRERKQAY QVELESIAVR LEEENEQLLK EKEERTRAHY KQIIEKVIPV VEKRKPPRVL 300 RRVCSMQW* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU468249 | 0.0 | CU468249.6 S.lycopersicum DNA sequence from clone LE_HBa-94K6 on chromosome 4, complete sequence. | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237796.1 | 0.0 | G-box-binding factor 4 isoform X1 | ||||
Swissprot | P42777 | 7e-51 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | A0A3Q7GZ36 | 0.0 | A0A3Q7GZ36_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g071510.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2771 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G03970.1 | 1e-37 | G-box binding factor 4 |