PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g064540.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 310aa    MW: 35716.4 Da    PI: 9.8987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g064540.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-181863147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
  Sopim04g064540.0.1 18 RGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63
                        899*****************************.***********996 PP
2Myb_DNA-binding53.84.5e-1770114147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +++++E+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ +
  Sopim04g064540.0.1  70 RRPFSEDEEEKLIGAHRIHGNK-WALISRLFP-GRTDNAVKNHWHVL 114
                         679*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.971364IPR017930Myb domain
SuperFamilySSF466892.43E-2916111IPR009057Homeodomain-like
SMARTSM007173.9E-151766IPR001005SANT/Myb domain
PfamPF002491.4E-171863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-271971IPR009057Homeodomain-like
CDDcd001671.20E-132162No hitNo description
PROSITE profilePS5129426.25665119IPR017930Myb domain
SMARTSM007172.4E-1469117IPR001005SANT/Myb domain
PfamPF002492.4E-1470114IPR001005SANT/Myb domain
CDDcd001671.16E-1072115No hitNo description
Gene3DG3DSA:1.10.10.604.5E-2072118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAEGGGSGDD TTRSSCPRGH WRPAEDEKLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW  60
FNQLDPRINR RPFSEDEEEK LIGAHRIHGN KWALISRLFP GRTDNAVKNH WHVLMARKQR  120
EQSKICGKRS LYQQQQHDSF LSDSKSSCYG FRRRNNNNNN NNMRIQEGNY GSKINFFEFQ  180
NPNKDRVFSM STTYSSSSPE FCGRIGSHLF RESSIDQKSL RQNNLSFSSH GRGGDNNNCK  240
RSTTFQNPFS YVDRNEYDSI TERVVNVSNS TFSFGKILKE NIEQQKYGEE AREKKDIPFI  300
DFLGVGISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30181187107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237755.10.0transcription factor MYB119-like
TrEMBLA0A3Q7GYG90.0A0A3Q7GYG9_SOLLC; Uncharacterized protein
STRINGSolyc04g064540.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-65myb domain protein 52