PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g056740.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20521.5 Da    PI: 7.4423
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g056740.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.32.3e-141563149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k+ien+    +tfskRr+g+ KKA+EL   Cd+++ ++++s+ gk + +
  Sopim04g056740.0.1 15 KKIENEDALLTTFSKRREGLYKKASELVRECDVDIGIMMISPAGKPHSF 63
                        689*****************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.605767IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-20766IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-22878IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-11929IPR002100Transcription factor, MADS-box
PfamPF003193.9E-191663IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-112944IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-114465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MERKKTKGRQ KIPIKKIENE DALLTTFSKR REGLYKKASE LVRECDVDIG IMMISPAGKP  60
HSFFHPTLDA IVTRFQNPDM QLSQGILLDT ITARNKVNEL KNRLEELDVV EDATIAQTTF  120
YDQMAEIRQK GWWESIEQLN ADEVTIFNAW LSDTCSKMCH RLKQLENGAS SSLGRGSFGV  180
*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237582.11e-133agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7G6651e-132A0A3Q7G665_SOLLC; Uncharacterized protein
STRINGSolyc04g056740.1.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.13e-24M-type_MADS family protein