PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim04g056310.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 318aa MW: 35688.2 Da PI: 7.1072 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.5 | 7.6e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ +k++G g+W++ ++ g++R++k+c++rw +yl Sopim04g056310.0.1 14 KGPWTPEEDQKLINHIKKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.5 | 6.3e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l Sopim04g056310.0.1 67 RGKFSQEEEQTILNLHAILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-26 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.491 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.08E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.07E-13 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.187 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MGRSPFCDEI GLKKGPWTPE EDQKLINHIK KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILN LHAILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 YDPMTHRPRT DIFNSLPHLI ALAKLKELVE HHHHSSWEGS QQAASTIAMR SLQSEVATLQ 180 YLNFLLLPQN ILPTTNVNIP EIEGYNNLLN SINNSLNNIN IPPPNNSTSL QDSIHFSHLP 240 ELQDMINTTT TTSPWQLPPT SSSSPAIIAT NDQSNSSINH TAEGDNTNCT PPFFGGANPN 300 SDWPDILLED SFFHDIP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00503 | DAP | Transfer from AT5G10280 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237385.1 | 0.0 | transcription factor MYB53-like | ||||
Swissprot | Q9S9Z2 | 4e-95 | MYB93_ARATH; Transcription factor MYB93 | ||||
Swissprot | Q9SBF3 | 2e-95 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A3Q7G2L7 | 0.0 | A0A3Q7G2L7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g056310.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 1e-96 | myb domain protein 93 |
Publications ? help Back to Top | |||
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