PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g054910.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 279aa    MW: 31052.5 Da    PI: 5.4269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g054910.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.5e-2176126256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Sopim04g054910.0.1  76 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 126
                         59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.86E-3475135No hitNo description
SuperFamilySSF541711.05E-2376134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-3276134IPR001471AP2/ERF domain
PROSITE profilePS5103223.23576133IPR001471AP2/ERF domain
SMARTSM003805.8E-3876139IPR001471AP2/ERF domain
PfamPF008471.2E-1477126IPR001471AP2/ERF domain
PRINTSPR003672.3E-117788IPR001471AP2/ERF domain
PRINTSPR003672.3E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAAAIDVYSS SSNLSDPLTE ELMKALEPFM KGILQIQAQI QFQNQQQQLQ LLHQQQQSLV  60
PMKQTGATSS QKATKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA  120
YKLRGEFARL NFPHLRHQLN NEFSDFKPLH SSVDAKLQAI CQSLANPKSD DSCSKSNSKP  180
RKSKTAAVSV DSNSAQESSS KSEITTDDSL KEEFSYPENG TIKIEASSSS SPPTPSEESS  240
SSSESDITFL DFAEPSFDES ENFFLPKYPS VEIDWAAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2275133160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237407.11e-144ethylene-responsive transcription factor RAP2-4
SwissprotO656653e-67ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A3Q7G2F21e-143A0A3Q7G2F2_SOLLC; Uncharacterized protein
STRINGSolyc04g054910.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-46ERF family protein