PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim04g050090.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 79aa MW: 9193.68 Da PI: 9.9305 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.9e-09 | 8 | 36 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 + rW eEdell ++v+++G ++W++I + Sopim04g050090.0.1 8 KRRWNREEDELLQKLVEEHGVKNWSLIGQ 36 579***********************975 PP | |||||||
2 | Myb_DNA-binding | 30.8 | 7e-10 | 40 | 77 | 9 | 48 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d+ +++a++++G++ + Ia + gRt+k +k++w+++l Sopim04g050090.0.1 40 DDTIIKAHAKFGNE-LSMIACLLS-GRTDKAIKNHWNSFL 77 7899**********.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.427 | 1 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.75E-16 | 5 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-8 | 6 | 36 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-4 | 7 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-7 | 8 | 36 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.67E-8 | 10 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-12 | 40 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.5E-7 | 40 | 76 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MKKISMIKRR WNREEDELLQ KLVEEHGVKN WSLIGQWIQD DTIIKAHAKF GNELSMIACL 60 LSGRTDKAIK NHWNSFLT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 2e-59 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159289.1 | 1e-26 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 3e-21 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | K4BRY2 | 1e-49 | K4BRY2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g050090.1.1 | 2e-50 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA27611 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 1e-23 | myb domain protein 73 |
Publications ? help Back to Top | |||
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