PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g049800.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 399aa    MW: 44003.2 Da    PI: 9.077
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g049800.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.6e-17111160155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopim04g049800.0.1 111 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 160
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-16111169IPR016177DNA-binding domain
PfamPF008474.2E-9111160IPR001471AP2/ERF domain
SMARTSM003802.0E-32112174IPR001471AP2/ERF domain
PROSITE profilePS5103217.794112168IPR001471AP2/ERF domain
CDDcd000182.02E-11112170No hitNo description
Gene3DG3DSA:3.30.730.104.4E-17112168IPR001471AP2/ERF domain
SMARTSM003800.0074204245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MLDLNNDSVF FKDDSVTSNT DSNSSSFQPS LSTLNFSILK SDRVFEIEDE SSTTGGGDML  60
TRQLFPVKGE IQGQSQCWLN LSVSESAGLE VPVYKPPVHK KSRRGPRSRS SQYRGVTFYR  120
RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNIT DYNEDMKQMK  180
NLSKEEFVQV LRRHSNGFSR GNSKYRGVTL HKCGRWEGQF IGKKAYDKCD GREAVTNFVA  240
STYEREKKED KRDGGSGENL DLNLWISLPL EGGLKGGEIG RNVHFNFGGR DMVIGKTFET  300
QSSSIVPQGP ATMSKLSIFT GMYPGFPPHS TEGAMMKAEA ASSCPVLPNW GWKIHSQGVV  360
TPVPVFSSSA ASSGFSTATT LHTNSLLPPS NQLRLPTN*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237667.20.0ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK035e-74RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A3Q7GVN90.0A0A3Q7GVN9_SOLLC; Uncharacterized protein
STRINGSolyc04g049800.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.27e-73related to AP2.7