PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g049740.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 109aa    MW: 12615 Da    PI: 11.0851
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g049740.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-101148139
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                        + rW  e dell ++v+++G ++W++I + ++ gR+ k+
  Sopim04g049740.0.1 11 KRRWNLEADELLQNLVEKHGAKNWSLIGQLIP-GRSKKS 48
                        579*****************************.***985 PP
2Myb_DNA-binding23.81.1e-0752861248
                        HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +++ ++++G+  W+ Ia  +  gRt++  k++w ++l
  Sopim04g049740.0.1 52 IIKSHAKFGNQ-WAMIAILLI-GRTDNAMKNHWSSFL 86
                        677899***99.*********.***********8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.063190IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-10548IPR009057Homeodomain-like
SMARTSM007175.3E-51088IPR001005SANT/Myb domain
SuperFamilySSF466898.03E-171187IPR009057Homeodomain-like
PfamPF002491.7E-81148IPR001005SANT/Myb domain
CDDcd001672.26E-71348No hitNo description
Gene3DG3DSA:1.10.10.601.7E-105187IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MEIMKKKCMI KRRWNLEADE LLQNLVEKHG AKNWSLIGQL IPGRSKKSYD TIIKSHAKFG  60
NQWAMIAILL IGRTDNAMKN HWSSFLKRKR PLMSKDLTFK NPQPPLIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-159892104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-159892104C-Myb DNA-Binding Domain
1msf_C2e-159892104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755167e-97HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772392.13e-45transcription factor MYB77-like
SwissprotO231602e-26MYB73_ARATH; Transcription factor MYB73
TrEMBLK4BRV01e-73K4BRV0_SOLLC; Uncharacterized protein
STRINGSolyc04g049740.1.12e-74(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2760522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.15e-29myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]