PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim04g025740.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 149aa MW: 17231.9 Da PI: 10.3652

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim04g025740.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.5	1.7e-11	22	77	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++kR ++t eq+++ +++ +k+++p++++ ++++++gL+ +++k+W N +++ek Sopim04g025740.0.1 22 KKKRFRLTVEQIQQVKDFLKKCPHPDKDQLIQISEEVGLKPKKIKNWIYNNKTQEK 77 79**************************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-13	8	60	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.309	19	79	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.59E-12	20	84	IPR009057	Homeodomain-like
SMART	SM00389	3.4E-7	21	83	IPR001356	Homeobox domain
CDD	cd00086	2.04E-8	22	79	No hit	No description
Pfam	PF00046	5.2E-9	22	77	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.2E-5	61	107	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MTNVGKKHVG ESSTSQNKAN KKKKRFRLTV EQIQQVKDFL KKCPHPDKDQ LIQISEEVGL 60 KPKKIKNWIY NNKTQEKIQV EKSANKTLRT ENEKLRSENM AMKEAMKKII CPQCDSERAS 120 NLENLKAENQ RLTDKILWYS ILLGGENF*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975516	4e-93	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027771932.1	1e-102	homeobox-leucine zipper protein ROC8-like
TrEMBL	A0A3Q7G3A0	1e-103	A0A3Q7G3A0_SOLLC; Uncharacterized protein
STRING	Solyc04g025740.1.1	1e-104	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA27516	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	6e-29	homeodomain GLABROUS 11