PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g014530.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 234aa    MW: 26781.7 Da    PI: 8.1112
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g014530.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18109159255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y GVr ++ +g+++AeIrd + ng   r++lg+f t+eeAa a+++a++ ++g
  Sopim04g014530.0.1 109 HYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFNTCEEAALAYDQAALTMRG 159
                         799******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.53E-27108167No hitNo description
Gene3DG3DSA:3.30.730.101.6E-28109168IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-22109168IPR016177DNA-binding domain
PfamPF008472.6E-13109159IPR001471AP2/ERF domain
SMARTSM003807.6E-34109173IPR001471AP2/ERF domain
PROSITE profilePS5103221.338109167IPR001471AP2/ERF domain
PRINTSPR003677.0E-9110121IPR001471AP2/ERF domain
PRINTSPR003677.0E-9133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MESSSPKTQY PNFNFFQDQS SLPWNDQHFL DEYLTNIDQN NDHSLPGSTC SFLTSKESYR  60
REVSSSNLHQ LPRSWSSSND TNSSKESNNR HEIEEVTSHH HDKNNSTKHY IGVRKRPWGK  120
YAAEIRDSTR NGIRVWLGTF NTCEEAALAY DQAALTMRGP LALLNFPMDK VRESLENIKY  180
ICEDGISPAA VLKATNKMRR VKHKRNRKKR NVLVFEDLGA ELLEELLTST SSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27108168161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197204MRRVKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236685.11e-175ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y93e-49ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A3Q7G0341e-174A0A3Q7G034_SOLLC; Uncharacterized protein
STRINGSolyc04g014530.1.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-41ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]