PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g014360.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 272aa    MW: 30446.4 Da    PI: 6.1517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g014360.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.9e-1360106354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN  +++Lr llP+       K +Ka+ L +Av+++++L
  Sopim04g014360.0.1  60 KSHSEAERRRRKRINGHLATLRNLLPNT-----IKTDKASLLAEAVRCVREL 106
                         69*************************8.....6**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.30757106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-1060106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1360109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.83E-1160108No hitNo description
SuperFamilySSF474599.03E-1461117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-1263112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.9E-5174221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MYQFPSFYEL GNTCSDSYNN FLHEIITSSS SEMFNNINNL ESSSVSPRSM AEAKAIAANK  60
SHSEAERRRR KRINGHLATL RNLLPNTIKT DKASLLAEAV RCVRELKQTT SELGATTTTT  120
TMSENDDDDD HTTLMTKIMF PSESDELNLS YCNESNNNNT DNNNDDRNLI IKASMCCEDR  180
PEIMMELRRA LSTVEGKIVR AEMSTVGGRI KCILWLEMLE NGCKEGLFVQ LRRALKVVMD  240
KANFGPQNMG QDLLGNNKRP RLLGGPINYA T*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236697.10.0transcription factor bHLH30-like
TrEMBLA0A3Q7G1550.0A0A3Q7G155_SOLLC; Uncharacterized protein
STRINGSolyc04g014360.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72832231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-32bHLH family protein