PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g012050.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 399aa    MW: 44575 Da    PI: 5.5268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g012050.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20156205255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++ ++k++g
  Sopim04g012050.0.1 156 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEDAARAYDETALKFRG 205
                         7********.**********76....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-32156214IPR001471AP2/ERF domain
PROSITE profilePS5103225.001156213IPR001471AP2/ERF domain
PfamPF008471.8E-13156205IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22156214IPR016177DNA-binding domain
SMARTSM003801.3E-36156219IPR001471AP2/ERF domain
PRINTSPR003676.2E-12157168IPR001471AP2/ERF domain
CDDcd000183.13E-28164215No hitNo description
PRINTSPR003676.2E-12179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MCKFKVANYR KKGNYKAIIR DDEEEESGIN NNDNINVMFS GNINREEEMS MMVTALTRVI  60
TGEDRILNQE NNNNNIIGSS SLNEFSGGVG EKRGREEQQY FLSDIISSSK VGEDSSINRT  120
IASNTPTTEA TFIYTTPTYD HNNNTNIIDC DQPRRRYRGV RQRPWGKWAA EIRDPYKAAR  180
VWLGTFDTAE DAARAYDETA LKFRGSKAKL NFPENVRLLP TSSMEKGSLT NTFPSNSVES  240
NLEFLTKKKV LTSTFPAENN MVFSTERQFM TDTFPTEYVP VSSIISPNTS PNTLSTISFF  300
PNSNPIAHTQ LSNSNSDDIN TQYFLNGDFQ RGNSSLSLLN QSMFSTTFQY SSSSPSSSSS  360
SRVPFVPSMY FSGSQPTSQS SENDFRATSS DSAHHPPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-25155216163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU8562510.0CU856251.8 S.lycopersicum DNA sequence from clone LE_HBa-70F1 on chromosome 4, complete sequence.
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237144.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A3Q7FZU10.0A0A3Q7FZU1_SOLLC; Uncharacterized protein
STRINGSolyc04g012050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.15e-32ERF family protein