PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g009950.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 988aa    MW: 111171 Da    PI: 5.1199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g009950.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.9e-14853248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Sopim04g009950.0.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                        78*****************************.************986 PP

2Myb_DNA-binding32.81.6e-1060103248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Sopim04g009950.0.1  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                         68*****************99.********8..**********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001675.24E-121053No hitNo description
PfamPF139214.7E-131070No hitNo description
SuperFamilySSF466895.39E-2133109IPR009057Homeodomain-like
CDDcd116591.49E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.4E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118311.8E-57406648IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 988 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYDPNDDPR  120
KLKPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDVRQR KRKRRGIDYN AEIPFEKKPP PGFYDVTEED RPVDQPKFPT  240
TIEELEGERR VDKEARLRKQ DIARNKIAER QDAPTSILHA NKLNDPEAVR KRSKLNLPAP  300
QIPDHELEAI AKIGIASDLI GGDELSEGNA ATRALLANYA QTPQHAMTPM RTPQRTPSTK  360
QDAIMMEAEN QRRLTQSQTP LLGGDNPLLH PSDFSGVTPK KREVQTPNPL LTPSATPGAT  420
SLTPRIGMTP SRDSYGMTPK GTPMRDELRI NEEMDMHSNA KLGQFNSKKE LLSGLKSLPQ  480
PKNEYQIVIQ QPPEENEEPE EKIEEDMSDR IAREKAEEEA KRQALLRKRS KVLQRELPRP  540
PIASLELIKS SLMRADEDKS SFVPPTLIEQ ADEMIRKELV SLLEHDNTKY PLDEKPEKEK  600
KKGVKRKIVA EPAIEDFEED ELKEADGLIK DEAHFLRVAM GHESESLDEF VEIHKATLND  660
IMYFPTRNAY GLSSVAGNME KLAALQNEFE NVKKKMDDDT KKATKLEQKI KVLTNGYQMR  720
AGKLWSQIES TFKKMDTAGT ELECFRALQK QEQLAASHRI NNMWEEVQKQ KELERTLQKR  780
YGDLIADTQK IQHLMDEYRI QDQMQEEVAA KNRALELAKA EMAEKDSVPS ADDVEPSGTG  840
QNSNTEENSA SASHVPIEAD VHVEPSGTNQ CSNAEENSAS IEADNVHVEP SGTSQCPIAE  900
ETSASISHDT TPRDVDGQVQ VADVSTMDSE AISDHVPMEG QQNPGEESNT VVTKTEDSTV  960
AAGDVDVTKT DDSGVVAGDG EADPKNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027923799Cell division cycle 5-like protein
5xjc_L0.027923799Cell division cycle 5-like protein
5yzg_L0.027923799Cell division cycle 5-like protein
5z56_L0.027923799Cell division cycle 5-like protein
5z57_L0.027923799Cell division cycle 5-like protein
5z58_L0.027923799Cell division cycle 5-like protein
6ff4_L0.027923799Cell division cycle 5-like protein
6ff7_L0.027923799Cell division cycle 5-like protein
6icz_L0.027923799Cell division cycle 5-like protein
6id0_L0.027923799Cell division cycle 5-like protein
6id1_L0.027923799Cell division cycle 5-like protein
6qdv_O0.027923799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDVRQRKRKRR
2198204QRKRKRR
3199204RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0954960.0EU095496.1 Solanum lycopersicum CDC5-like protein (cdc5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234729.20.0CDC5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A3Q7G0D00.0A0A3Q7G0D0_SOLLC; Uncharacterized protein
STRINGSolyc04g009950.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]