PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g009450.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 600aa    MW: 67227 Da    PI: 9.4804
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g009450.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.52.2e-105398352
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52
                        ++GVr +k rg +vAe +dp     + kr+ lg+f taeeA +a+ a   +
  Sopim04g009450.0.1 53 FSGVRKRK-RGEYVAEKWDPI----TkKRVCLGTFNTAEEASEAYLAKQCE 98
                        78***999.8******99962....36******************987665 PP
2AP235.91.9e-11217259248
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaia 48 
                         g  G+r  k +gr+ AeIrdp     + k+++lg+f t eeA +a+  
  Sopim04g009450.0.1 217 GLLGIRKQK-NGRYSAEIRDPI----KhKQVWLGTFNTIEEASQAYLS 259
                         566999888.8*********72....46*****************975 PP
3AP2323e-10308355253
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                         ++ GVr +  +g++ +eI  p    ++ k+++lg+fgt eeA  a+   ++++
  Sopim04g009450.0.1 308 RIIGVRKNQ-WGKYTSEIINP----ISkKKIWLGTFGTYEEASLAYQSKKLEF 355
                         789***888.*******9996....246*****************98777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.83E-135192No hitNo description
SMARTSM003801.3E-752113IPR001471AP2/ERF domain
PROSITE profilePS5103212.5552110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1252102IPR001471AP2/ERF domain
PfamPF008471.3E-55397IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-1053102IPR016177DNA-binding domain
SuperFamilySSF541715.56E-11216260IPR016177DNA-binding domain
PROSITE profilePS5103213.525217276IPR001471AP2/ERF domain
SMARTSM003802.4E-5219263IPR001471AP2/ERF domain
PfamPF008473.7E-5220261IPR001471AP2/ERF domain
CDDcd000182.27E-13220257No hitNo description
Gene3DG3DSA:3.30.730.109.8E-13220257IPR001471AP2/ERF domain
PfamPF008475.5E-6307355IPR001471AP2/ERF domain
SMARTSM003804.1E-5308362IPR001471AP2/ERF domain
PROSITE profilePS5103213.946308374IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-11309357IPR016177DNA-binding domain
CDDcd000183.43E-12311356No hitNo description
Gene3DG3DSA:3.30.730.103.0E-13311356IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MESAGANAEE NRSSVSAHHM YDKMPSSNST NKSVPAAERS DSIVLGLQNA ANFSGVRKRK  60
RGEYVAEKWD PITKKRVCLG TFNTAEEASE AYLAKQCEFS TARHMLDEMP SSNSTNKTAN  120
AAAGSTDADH GKKPLIQEIS FSHKSMLLGA EWHNMGKLRK KTFKKKQVCK GFNSNMHASN  180
KPINVMNLES CKQTSCSLSK SADRCNTMKR NPKAKSGLLG IRKQKNGRYS AEIRDPIKHK  240
QVWLGTFNTI EEASQAYLSK KSEFDMLTQG YKEDKPNNCD QTKPESSVGA SLSSGGRNKK  300
MDSPKTTRII GVRKNQWGKY TSEIINPISK KKIWLGTFGT YEEASLAYQS KKLEFREIVK  360
AKKKCSKKIH LNAREKQVGK EKIAVNCEGF QPESVAGETF HANLYMKVGV QRSKEAELQS  420
NMPVDFSTGE KQAGKEKLVV NCEAFQSESA AEVTFHANQY MKFDVQRSKE TKLQSNMPVD  480
FSTAEKQAEK EKLVVNFEGF LPESAAEETF HANQYMKFDV QRSKESELQS KMPVDFSTWE  540
KQGSQEDTDS SMGKWVQLPD GREVKFSLEL GVPIIDKYGS LLGDFCGFDN LWIYDESIY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3297010.0CU329701.1 S.lycopersicum DNA sequence from clone LE_HBa-49A17 on chromosome 4, complete sequence.
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572339.11e-106PREDICTED: uncharacterized protein LOC107870354
TrEMBLA0A3Q7FWN80.0A0A3Q7FWN8_SOLLC; Uncharacterized protein
STRINGSolyc04g009450.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1658755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-14ERF family protein