PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g006990.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 212aa    MW: 24168.1 Da    PI: 7.5061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g006990.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-141763354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Sopim04g006990.0.1 17 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 63
                        79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.1361463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-121763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-41766No hitNo description
SuperFamilySSF474592.49E-161886IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-161880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-132069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.6E-5100148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MMNSQEIMDA KALAASKSHS EAERRRRERI NNHLAKLRSL LPNTTKTDKA SLLAEVIQHV  60
KELKRQTSQI AQTNPLIPTE INELTVDYCN NEEGNFMIKV SLCCEDRSDL LHDLIKTLKS  120
LRLKTLKAEI TTLGGRVRNV LFITRDQQQD NDDTWPINDN NNDNDDDQMK YCLRSIQEAL  180
KEVMEKSNGN DSGNSGSIKR QRTSNNNNIH Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227ERRRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237007.11e-153transcription factor bHLH30-like
SwissprotQ9S7Y18e-82BH030_ARATH; Transcription factor bHLH30
TrEMBLM1ABV21e-123M1ABV2_SOLTU; Uncharacterized protein
STRINGSolyc04g006990.2.11e-154(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]