PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g005600.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 332aa    MW: 38139.6 Da    PI: 7.2359
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g005600.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-141461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT +Ed++l+ +v ++G g+W+  + + g+ R++ +c++rw +yl
  Sopim04g005600.0.1 14 KGPWTHDEDQKLLAYVDEHGYGSWSDLPLRAGLQRCGRSCRLRWINYL 61
                        79********************************************97 PP

2Myb_DNA-binding48.42.2e-1567110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++ eE+  + +++++lG++ W+ Ia++++ +R+++++k++w++
  Sopim04g005600.0.1  67 RGKFSSEEERTIFQLHALLGNR-WSIIASHLP-NRSDNEIKNYWNT 110
                         89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.944961IPR017930Myb domain
SuperFamilySSF466898.03E-3011108IPR009057Homeodomain-like
SMARTSM007171.7E-91363IPR001005SANT/Myb domain
PfamPF002491.9E-131461IPR001005SANT/Myb domain
CDDcd001675.47E-81661No hitNo description
PROSITE profilePS5129425.18862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2565117IPR009057Homeodomain-like
SMARTSM007174.7E-1666114IPR001005SANT/Myb domain
PfamPF002491.7E-1467110IPR001005SANT/Myb domain
CDDcd001672.04E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRSPCLDKD GLKKGPWTHD EDQKLLAYVD EHGYGSWSDL PLRAGLQRCG RSCRLRWINY  60
LRPNIKRGKF SSEEERTIFQ LHALLGNRWS IIASHLPNRS DNEIKNYWNT RLKKRLINMG  120
IDPMTHQPKR DGSNYKSIAS LSHMAEWETA RLEAEARLVR NKSTYNNNNN NNNNNNNNNN  180
NNLYRRPHNT LHRIPCLDIL KAWQMSRTNV PTINDISAIL LDGFIKNTRT KICDSTTRST  240
FNNIEENVEV GEDLCIFEDT ITKDNDIQTE FSIIEGLDEL FPEYGYSQNP GNYSSEVQMD  300
GCFGNFEDNK STNWNNIAHL VMTSPIGSPL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4686390.0CU468639.4 S.lycopersicum DNA sequence from clone SL_MboI-101P13 on chromosome 4, complete sequence.
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319449.10.0transcription factor MYB106-like
SwissprotQ9LE635e-86MY106_ARATH; Transcription factor MYB106
TrEMBLM0ZSU00.0M0ZSU0_SOLTU; Uncharacterized protein
STRINGSolyc04g005600.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-84myb domain protein 16