PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim04g005220.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 420aa MW: 45911.5 Da PI: 4.9684 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00044 | 244 | 290 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P + s+ Ka +L + ++Y++sLq Sopim04g005220.0.1 244 RREKISERMKFLQDLVPGCNkrePVISQVTGKAVMLDEIINYVQSLQ 290 9*****************76565445555789**************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.004 | 232 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-4 | 238 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-9 | 244 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.09E-6 | 244 | 294 | No hit | No description |
SuperFamily | SSF47459 | 3.14E-9 | 244 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MNIVSMDDAE PKDWQFSGSN LINASNRIID SFCVSVWGNP ISLSNVGLCG TNIPMNPGAA 60 TVLDWTQPNA MSKGGTFSMV PQSLTQLTAD SEKVGDMMNP FAIPNSFNTY HNGLIFGESQ 120 DVFDSPSTAI SQKKQMRNAV ESSDQDVPLP LEYEHTDRSP LKNDKNVNFV KSQGEAKECV 180 GISENESECS GHQEEVEGGY SSARCLGSRK RKRSGQDAEF DQMNGAQQQP AELAKEQNLN 240 SILRREKISE RMKFLQDLVP GCNKREPVIS QVTGKAVMLD EIINYVQSLQ RQVEMKLATI 300 NPRLDFNIDA LLAKEILHSR AGTSSSLAFA PDLTVPYQSS HQLQRGLVHS GLPGSGNSID 360 TLLKSIYPFL AVTSGGYKER SSQLPNDELH NVVEMGLCTS APLHIREGSL PSGQMKEEP* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027772507.1 | 0.0 | transcription factor bHLH49-like | ||||
TrEMBL | M0ZP13 | 0.0 | M0ZP13_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g005220.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2871 | 21 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 3e-42 | bHLH family protein |