PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g123430.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 514aa MW: 56903.8 Da PI: 5.2424 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.8 | 5.5e-13 | 240 | 296 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++t+e+Aa+a++ a++k++g Sopim03g123430.0.1 240 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDTEEKAARAYDLAALKYWG 296 78*******************333.44555535555.77******************98 PP | |||||||
2 | AP2 | 33.5 | 1.1e-10 | 307 | 350 | 9 | 55 |
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Sopim03g123430.0.1 307 HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 350 7789******988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.01E-13 | 240 | 302 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.2E-10 | 240 | 296 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.11E-19 | 240 | 305 | No hit | No description |
SMART | SM00380 | 1.7E-15 | 241 | 305 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.543 | 241 | 358 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-11 | 241 | 305 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-6 | 242 | 253 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-26 | 306 | 364 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-5 | 307 | 350 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-14 | 308 | 360 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.16E-21 | 308 | 360 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.4E-15 | 308 | 358 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-6 | 340 | 360 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MSNWLGFSLT PDFRIDDDDE EEVKNYERRN EAAENTPVSV MPLSTNRSLC MMDPFPRCEP 60 TEDCWRYENH EMSTANNPEE EEGPKLEDFL GCCYSNSPSN EEQQISEINV NIPPSINQSD 120 HEQHQLEIGA NMKLIQSPQM MIQNSQLQSS HHEFAHSTSS VYHLPFDGAT SVSGFKSWLR 180 QASVAAPLMS SAEEIVNPSN CQALSLAAAP KKRPVAVKNG GGSKESVPRK SIDTFGQRTS 240 QYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQGGYDTE EKAARAYDLA ALKYWGPNTH 300 INSPEKHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG TSAVTNFDIS 360 KYDVKRICSS STLITGDLAK RSPSKDSVVC PSSYEDYSSC TTSPQPILAI TNGEQLQQPI 420 DSFMNMVPLM GAAGSSSRSS SNAPSPKCSG SGEMSCDFGV GLEYPQAYYS PVQVQDHKFE 480 DGSKENDDNS SSSGQIGNMD LVHPVPMFAL WNQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353688.1 | 0.0 | AP2 domain transcription factor LIA | ||||
Swissprot | Q1PFE1 | 1e-102 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A3Q7GM43 | 0.0 | A0A3Q7GM43_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g123430.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8777 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 9e-97 | AP2 family protein |
Publications ? help Back to Top | |||
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