PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g121840.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 336aa    MW: 37204.2 Da    PI: 6.3184
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g121840.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.7e-11555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        + +WT eE++ l+ +v+++G+g+Wk I r         +R+  ++k++w++
  Sopim03g121840.0.1  5 KVKWTSEEEDALKAGVTKHGSGRWKNIIRDPEfapilINRSNIDLKDKWRN 55
                        579***************************99999*999***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.207161IPR017930Myb domain
SuperFamilySSF466894.52E-15259IPR009057Homeodomain-like
SMARTSM007174.8E-7459IPR001005SANT/Myb domain
PfamPF002491.2E-7555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-13557IPR009057Homeodomain-like
CDDcd116602.73E-19657No hitNo description
SuperFamilySSF467854.14E-14112183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005267.7E-15112177IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.182114182IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.9E-13114182IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.3E-10116175IPR005818Linker histone H1/H5, domain H15
CDDcd000731.19E-10116174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGNPKVKWTS EEEDALKAGV TKHGSGRWKN IIRDPEFAPI LINRSNIDLK DKWRNMCIYT  60
AGQGSKDKSI VVRTRPMEID AFVPSPIQSL PPITSAFENE AIEDSPDVQP EGVNAPKYND  120
MIFEALSSMG DSNGSDLGAI VGFIEQRHEV QPNFRRTLSS KLRRLVAQGK LEKVQKCYKM  180
KDATSETNIS TPQQNDVRSW PVPNSVPRQS DVLSWPVPSS APKQNDVLSW PVLNSAPKQN  240
DVRSRPVPNM ASKQNDVRSW QVPTSGVKVS SGTAEEAARI AADIVADAEN KRCLEVAAVR  300
DAEMKLRMVD DAESMLQIIK EIYEHCLQGE IILLA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384490.0AC238449.1 Solanum lycopersicum chromosome 3 clone C03HBa0112C24, complete sequence.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235581.10.0single myb histone 4
TrEMBLA0A3Q7FUA40.0A0A3Q7FUA4_SOLLC; Uncharacterized protein
STRINGSolyc03g121840.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-55MYB_related family protein