PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim03g119800.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 341aa MW: 37390.5 Da PI: 5.0502 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.2e-19 | 24 | 75 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +++ GVr+++ +grWvAeI+d ++ r +lg+f+tae+Aa+a+++a++ l+g+ Sopim03g119800.0.1 24 PRFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDQAARTLRGA 75 6799******.7*********....4456*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.96E-31 | 24 | 82 | No hit | No description |
Pfam | PF00847 | 3.1E-13 | 24 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.468 | 25 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-29 | 25 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-20 | 25 | 83 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.8E-36 | 25 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MKPPPPQPND GIRTRRKPSS RGHPRFVGVR QRPSGRWVAE IKDSLQKVRL WLGTFDTAED 60 AARAYDQAAR TLRGANARTN FELPASDSQQ GSSIVENSEP FNFEEACRTE EPENSLVGAL 120 KAKLFNSKNS RSFIQAYASN SSSELASKVK PSVPCSEIKK TSTQSEKLPK IGHVKNCSDY 180 LFRGNHNLDY ISLMTNDYQP MISSSQCQDN QLYSGTDSAI MWLNEQGTLP WGEPQMSQVQ 240 DEVSFDTTIN INNNINTNIF GGGNSTTATC TWPVSVSEPT VDLSAFGGID VLNGSIMMPD 300 MNGLTHTSSV TTEQQFLQFE NGLWGVGDSA GWDPFLLSSV * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-16 | 23 | 81 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015161747.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF034-like | ||||
TrEMBL | A0A3Q7FUR3 | 0.0 | A0A3Q7FUR3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g119800.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11869 | 18 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 6e-19 | related to AP2 11 |