PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g119580.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 386aa    MW: 43278.9 Da    PI: 5.1318
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g119580.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-1590136353
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                          kGVr +k +g+++AeIrdps+    kr++lg+f t e A +a++a r ++
  Sopim03g119580.0.1  90 PKGVRMRK-WGKYAAEIRDPSQ---GKRIWLGTFETVEAASQAYEAKRAEF 136
                         59****99.**********964...3*******************999775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.81889149IPR001471AP2/ERF domain
PRINTSPR003671.6E-690101IPR001471AP2/ERF domain
PfamPF008471.1E-890135IPR001471AP2/ERF domain
CDDcd000181.10E-1791131No hitNo description
Gene3DG3DSA:3.30.730.106.3E-1891132IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-1491135IPR016177DNA-binding domain
SMARTSM003807.8E-1191145IPR001471AP2/ERF domain
PRINTSPR003671.6E-6112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDGCISSVRK VRIVYDDPDA TDSESDDDQN AARFDKNVNR IKRVVKEIVI PVVSWENDFK  60
KCSKLDNIRI KDSKKIHENK KVQLKSTALP KGVRMRKWGK YAAEIRDPSQ GKRIWLGTFE  120
TVEAASQAYE AKRAEFDRII SLGKGKNLSP GPAECSMACT SHPTNGKNRV YSHPSPSSVL  180
DVPTSSAAAP VESNENLTRD MARMPDSGSE DFSLSFEDQM LHEFIKQRQG ISELIEHPLI  240
EQGSISNSVM EMTEVNIRKK TKARQPTIAS CKILTKGTED YSNDKSIFSV LNEPTIMSPI  300
HTELLHLNIE ETAVTGNSLK LLGFDDNALF DKDISQLFDP YADAICLDNT FQCCDGWNEC  360
VYCKIFKDEV DLDEVDLRWL DAVLV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236418.10.0uncharacterized protein LOC101265720
TrEMBLA0A3Q7FWB60.0A0A3Q7FWB6_SOLLC; Uncharacterized protein
STRINGSolyc03g119580.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127181519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-19ERF family protein