PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g119370.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 281aa    MW: 32085.6 Da    PI: 6.4032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g119370.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.9e-192572148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd+llv++++ +G g+W+  a++ g++Rt+k+c++rw++yl
  Sopim03g119370.0.1 25 RGPWTIEEDKLLVHYITNHGEGRWNMLAKHAGLKRTGKSCRLRWLNYL 72
                        89********************************************97 PP
2Myb_DNA-binding53.26.6e-1778121146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T++E++l+++++ +lG++ W++Ia++++ gRt++++k++w++
  Sopim03g119370.0.1  78 RGNLTPQEQLLILELHSKLGNR-WSKIAQYLP-GRTDNEIKNYWRT 121
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6842072IPR017930Myb domain
SuperFamilySSF466892.12E-3123119IPR009057Homeodomain-like
SMARTSM007177.9E-142474IPR001005SANT/Myb domain
PfamPF002492.6E-162572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-242679IPR009057Homeodomain-like
CDDcd001675.58E-112772No hitNo description
PROSITE profilePS5129425.37773127IPR017930Myb domain
SMARTSM007174.7E-1577125IPR001005SANT/Myb domain
PfamPF002498.3E-1678121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2380126IPR009057Homeodomain-like
CDDcd001672.83E-1182121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
METEMSFLSK SSSSSSSDDD IELRRGPWTI EEDKLLVHYI TNHGEGRWNM LAKHAGLKRT  60
GKSCRLRWLN YLKPDVKRGN LTPQEQLLIL ELHSKLGNRW SKIAQYLPGR TDNEIKNYWR  120
TRVQKQARNL KIDSNSAAFQ EMIRSLWIPR LLQKIQSSSV SPSIQSSQSS TPPGFSTSSN  180
SSSHSSSIYN SPNNISECPQ IPTREIDDSD LDSFVKAHFP FDNSYDMDNF GQLTTGNFND  240
VMDYDQLSGD HIKMTGDVIA DSFWSNMDEF FYQKTGYEQQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-29221271105MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-292212724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236420.20.0transcription factor MYB62-like
SwissprotQ9C9G71e-77MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A3Q7FT000.0A0A3Q7FT00_SOLLC; Uncharacterized protein
STRINGSolyc03g119370.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-77myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]