PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g117720.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 372aa    MW: 42093.8 Da    PI: 7.249
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g117720.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-1556115155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  Sopim03g117720.0.1  56 SIYRGVTRHRWTGRYEAHLWDkNCWNEtqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 115
                         57*******************999966656446*************************98 PP
2AP251.13.2e-16158209155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Sopim03g117720.0.1 158 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 209
                         89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-1256115IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-1756124IPR016177DNA-binding domain
PROSITE profilePS5103220.27157123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-1657123IPR001471AP2/ERF domain
SMARTSM003809.4E-2657129IPR001471AP2/ERF domain
PRINTSPR003674.3E-65869IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17158219IPR016177DNA-binding domain
CDDcd000188.74E-24158219No hitNo description
PfamPF008475.9E-12158209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17159218IPR001471AP2/ERF domain
PROSITE profilePS5103218.334159217IPR001471AP2/ERF domain
SMARTSM003801.2E-24159223IPR001471AP2/ERF domain
PRINTSPR003674.3E-6199219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAKTSKSNTT STSSSSSSNK CDSKAKRSNK IDGNAIGKVK RTRKSVPRDS PPQRSSIYRG  60
VTRHRWTGRY EAHLWDKNCW NETQNKKGRQ VYLGAYDDEE AAAHAYDLAA LKYWGQDTML  120
NFPIMTYENE LKEMEGQSKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF  180
GNKYLYLGTY ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YIKWLRPSDQ TNNDNTIINP  240
EPNPNPNPND IHLMPNTKDD TNFTQQQQQI SGCDVTVAAL PHPGGGAATS SAALELLLQS  300
TKLKEMLERR SEVIECPETP PEPDRPRRSF PDDIQTYFDC QEPSSFIEEH DIIFGDLDSL  360
TLPMFQCELI N*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1247310.0EU124731.1 Solanum lycopersicum chromosome 3 clone C03HBa0012D06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235883.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-121AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A3Q7FV650.0A0A3Q7FV65_SOLLC; Uncharacterized protein
STRINGSolyc03g117720.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-102ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]