PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g117130.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 163aa    MW: 18646.8 Da    PI: 6.7829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g117130.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18754253
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                        +y+GVr+++ +g+Wv+eIr+ps    ++r++lg++ t e+Aa+a+++a++ +
  Sopim03g117130.0.1  7 KYRGVRQRH-WGSWVSEIRHPSL---KTRIWLGTYETSEDAARAYDEAARLM 54
                        8*******9.**********944...5*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.05E-33666No hitNo description
SMARTSM003802.8E-40770IPR001471AP2/ERF domain
PfamPF008471.5E-12756IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21766IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-33765IPR001471AP2/ERF domain
PROSITE profilePS5103220.85764IPR001471AP2/ERF domain
PRINTSPR003671.3E-10819IPR001471AP2/ERF domain
PRINTSPR003671.3E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSRPQQKYRG VRQRHWGSWV SEIRHPSLKT RIWLGTYETS EDAARAYDEA ARLMCGSTAR  60
TNFPYNATES SRFLSSALIA KLQRCNMSSL TATSRRPGKT RLEDKKENEI STLVRDTGDG  120
EERQSESASQ QYMKALEDEH IEQMIEELLD YGSIEMCSVR NE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17664463ATERF1
3gcc_A3e-17664463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8897410.0AB889741.1 Solanum lycopersicum ERF52 mRNA for AP2/ERF transcription factor SlERF52, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307057.11e-118ethylene-responsive transcription factor 52
SwissprotQ94AW51e-60ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A3Q7GHX31e-117A0A3Q7GHX3_SOLLC; Uncharacterized protein
STRINGSolyc03g117130.2.11e-118(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]