PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g116010.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Nin-like
Protein Properties Length: 312aa    MW: 36029.8 Da    PI: 4.6032
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g116010.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK78.47.9e-25144192452
              RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          +s + +skyF++pi+ AAkeL+++lT+LK++CR +GI+RWPhRk+ sl
  Sopim03g116010.0.1 144 MLSRDAISKYFYMPITRAAKELNIGLTLLKKRCRDLGIRRWPHRKLMSL 192
                         588999****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.915127213IPR003035RWP-RK domain
PfamPF020421.6E-20145192IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGSDQSNFEF IMTKQDNHQD LLSLPPQLPS LDDFSEFSGH YAIDYQYDLS IQENTNPLME  60
MECTLEDPFY SSFYSLTPGE LCYDEIGNEV RMLNEMSGEL IGNGHQQVLL CDNINQQEIV  120
GNEEIIVTEK EKDNIREEIN SSRMLSRDAI SKYFYMPITR AAKELNIGLT LLKKRCRDLG  180
IRRWPHRKLM SLQTLIKNVK ELEKVGGNGM EEKLKDVIKL LEKEKKKMEE IPDMELEEKT  240
KRLRQACFKA NYKRRRLLCM PELHASFGSY CSTTPSLDDN VAIGDQHEED DEEIKSLLAD  300
CFSYNSPTLH D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252256KRRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068278.21e-171protein RKD2
TrEMBLA0A3Q7FR770.0A0A3Q7FR77_SOLLC; Uncharacterized protein
STRINGSolyc03g116010.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42742142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-40RWP-RK domain-containing protein