PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim03g115940.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 502aa MW: 54503.8 Da PI: 5.1704

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim03g115940.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	157	217	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Sopim03g115940.0.1 157 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 217 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	154	214	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	159	215	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	161	215	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	163	199	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MREVKEPEIK LFGKKIVLPE NGMILPVIVT GEDSDVGKSM SASEVVTADE SSTGSDRDPC 60 LVDKEGNSSQ QDESDDGSEY EKDEADKDRM TRELSEAKLE EKDQNLMMEE SENLKSPSEN 120 KTKTHTIDDD SPTVKSSKTE DDQNDASNSQ QKTLKKPDKI LPCPRCNSMD TKFCYYNNYN 180 VNQPRHFCKS CQRYWTAGGT MRNVPVGAGR RKNKNSASHC RHIMISEALE AARIDPPNGF 240 SHPVFKPNGT VLSFGPDLPL CDSMASVLNL AENKTPNGIR NGLYRPENPS GIGGENGDDC 300 SSGSSVTTSN SMAEGVKNCP PEAVMQTINA FPSPVPCLPG VPWPIPYAAV PFPAISPAGY 360 PMPFCPPPYW NCNVPGPWSL PWLTPPSPTA NQKGSVSAPN SPLGKHSRDG ELLKPNNPEG 420 QKNSEGSVLV PKTLRIDDPD EAAKSSIWST LGIKYDSVSR GGLFKSLQPK NSEKDHPTTT 480 SPSLQANPAA FSRSLSFQER V*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MREVKEPEIK LFGKKIVLPE NGMILPVIVT GEDSDVGKSM SASEVVTADE SSTGSDRDPC  60
LVDKEGNSSQ QDESDDGSEY EKDEADKDRM TRELSEAKLE EKDQNLMMEE SENLKSPSEN  120
KTKTHTIDDD SPTVKSSKTE DDQNDASNSQ QKTLKKPDKI LPCPRCNSMD TKFCYYNNYN  180
VNQPRHFCKS CQRYWTAGGT MRNVPVGAGR RKNKNSASHC RHIMISEALE AARIDPPNGF  240
SHPVFKPNGT VLSFGPDLPL CDSMASVLNL AENKTPNGIR NGLYRPENPS GIGGENGDDC  300
SSGSSVTTSN SMAEGVKNCP PEAVMQTINA FPSPVPCLPG VPWPIPYAAV PFPAISPAGY  360
PMPFCPPPYW NCNVPGPWSL PWLTPPSPTA NQKGSVSAPN SPLGKHSRDG ELLKPNNPEG  420
QKNSEGSVLV PKTLRIDDPD EAAKSSIWST LGIKYDSVSR GGLFKSLQPK NSEKDHPTTT  480
SPSLQANPAA FSRSLSFQER V*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004235992.1	0.0	cyclic dof factor 1
TrEMBL	A0A3Q7GH33	0.0	A0A3Q7GH33_SOLLC; Uncharacterized protein
STRING	Solyc03g115940.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-92	cycling DOF factor 3