PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim03g114720.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 557aa MW: 60848.4 Da PI: 8.5989

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim03g114720.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.7	1.6e-16	259	308	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr ++P++ ++K +Ka+ L +++eYI+ Lq Sopim03g114720.0.1 259 RSKHSATEQRRRSKINDRFQMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 308 889***********************9....9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.1E-23	254	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-19	255	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.272	257	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.13E-15	259	312	No hit	No description
Pfam	PF00010	3.8E-14	259	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.4E-13	263	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009742	Biological Process	brassinosteroid mediated signaling pathway
GO:1902448	Biological Process	positive regulation of shade avoidance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PRPPQGGYLK THDFLQPLEQ AEKTLREEET 60 NVEVATVEKP PPPVAATPSG EHILPGGIGT FSISYLHQRI PKPEASLFSV AQASSTDRND 120 ENSNCSSFTG SGFTLWDESA VKKGKTGKEN SGGDRHVLRE GGVNTGGVQP TTSLEWQSQS 180 SSNHKHNTTA LSSLSSAHQS SPLKSQSFLH MITSAKSAQD DDDDDEDFVI KKEPQSHLRG 240 SLSVKVDGKG NDQKPSTPRS KHSATEQRRR SKINDRFQML RGIIPNSDQK RDKASFLLEV 300 IEYIHFLQEK VHKYEESYQG WDNEPPKLPL SKCHRTTHGV SNLPQRIINA SSASLTYAGK 360 FDESIMGISS ANPINVQKLE PNISSTGLKD KGQQPGLTNK PTTVPMHPNT FSFSGTSSTA 420 ALYSSKLIAD TDKLESKSHS QFSLSRSHMT DYAIPNANPE RLELPIESGT ISISSAYSQG 480 LLNTLTQALH SSGVDLTQAN ISVQIDLGKR ANGRVNSSAS TVKGDNVSTS NQPIPKSRVT 540 TTREEPDHAF KRRKTS*

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PRPPQGGYLK THDFLQPLEQ AEKTLREEET  60
NVEVATVEKP PPPVAATPSG EHILPGGIGT FSISYLHQRI PKPEASLFSV AQASSTDRND  120
ENSNCSSFTG SGFTLWDESA VKKGKTGKEN SGGDRHVLRE GGVNTGGVQP TTSLEWQSQS  180
SSNHKHNTTA LSSLSSAHQS SPLKSQSFLH MITSAKSAQD DDDDDEDFVI KKEPQSHLRG  240
SLSVKVDGKG NDQKPSTPRS KHSATEQRRR SKINDRFQML RGIIPNSDQK RDKASFLLEV  300
IEYIHFLQEK VHKYEESYQG WDNEPPKLPL SKCHRTTHGV SNLPQRIINA SSASLTYAGK  360
FDESIMGISS ANPINVQKLE PNISSTGLKD KGQQPGLTNK PTTVPMHPNT FSFSGTSSTA  420
ALYSSKLIAD TDKLESKSHS QFSLSRSHMT DYAIPNANPE RLELPIESGT ISISSAYSQG  480
LLNTLTQALH SSGVDLTQAN ISVQIDLGKR ANGRVNSSAS TVKGDNVSTS NQPIPKSRVT  540
TTREEPDHAF KRRKTS*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00498	DAP	Transfer from AT5G08130	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013786	0.0	BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010318888.1	0.0	transcription factor BIM1 isoform X2
Swissprot	Q9LEZ3	1e-90	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A3Q7GGC3	0.0	A0A3Q7GGC3_SOLLC; Uncharacterized protein
STRING	Solyc03g114720.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3969	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	2e-87	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]