PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g112390.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 326aa    MW: 37140.3 Da    PI: 6.6003
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g112390.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.7e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l ++++ +G g+W+++++  g+ R++k+c++rw +yl
  Sopim03g112390.0.1 14 KGLWSPEEDEKLSNYITNFGIGSWSSVPKLAGLQRCGKSCRLRWINYL 61
                        678*******************************************97 PP
2Myb_DNA-binding46.77.5e-1567110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg ++++E+++++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
  Sopim03g112390.0.1  67 RGMFSQDEEDKIISLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                         788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-24664IPR009057Homeodomain-like
PROSITE profilePS5129416.23961IPR017930Myb domain
SuperFamilySSF466891.01E-2812108IPR009057Homeodomain-like
SMARTSM007171.1E-91363IPR001005SANT/Myb domain
PfamPF002492.7E-131461IPR001005SANT/Myb domain
CDDcd001671.86E-81761No hitNo description
PROSITE profilePS5129423.61162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2565116IPR009057Homeodomain-like
SMARTSM007172.5E-1366114IPR001005SANT/Myb domain
PfamPF002499.8E-1467110IPR001005SANT/Myb domain
CDDcd001671.51E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRHSCSVKQ KLRKGLWSPE EDEKLSNYIT NFGIGSWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQDEEDKIIS LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLMKQG  120
IDPNTHKPLK ENQIIKDEEN CTNKTSMLQI PPHLNEMGNG QFTDSKQVFD LLFVHDFQSN  180
TNPREYNSQV LAQYHDHQGE FENHQNYVFC SGSSVTKLEH VQMTETDFGS SSTSRMSSSN  240
SSNMCSNQNT AGIQINGMSE NSEALSWDIE NKMESLFQYP YIGIKNEESK SSPSQERDQL  300
YGNTTSGDFM SNYPLSSLTE EFKWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236253.10.0myb-related protein 315-like isoform X1
TrEMBLA0A3Q7FS330.0A0A3Q7FS33_SOLLC; Uncharacterized protein
STRINGSolyc03g112390.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-77myb domain protein 86